1JYR	Signaling Protein Inhibitor	date	Sep 13, 2001
title	Xray Structure Of Grb2 Sh2 Domain Complexed With A Phosphory Peptide
authors	P.Nioche, W.Q.Liu, I.Broutin, F.Charbonnier, M.T.Latreille, M.V B.Roques, C.Garbay, A.Ducruix
compound		source
Molecule: Growth Factor Receptor-Bound Protein 2 Chain: A Fragment: Sh2 Domain Synonym: Grb2 Adapter Protein Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Expression_system_taxid: 562
Molecule: Peptide: Pspyvnvqn Chain: L Engineered: Yes		Synthetic: Yes Organism_scientific: Synthetic Construct Organism_taxid: 32630 Other_details: This Peptide Was Chemically Synthesized.
symmetry	Space Group: P 41 21 2	R_factor 0.190 R_Free 0.228
crystal cell	length a length b length c angle alpha angle beta angle gamma 50.800 50.800 89.440 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.55 Å
ligand	PTR BindingDB	enzyme
related structures	by homologous chain: 1ZFP
Primary reference	Crystal structures of the SH2 domain of Grb2: highlight on the binding of a new high-affinity inhibitor., Nioche P, Liu WQ, Broutin I, Charbonnier F, Latreille MT, Vidal M, Roques B, Garbay C, Ducruix A, J Mol Biol 2002 Feb 1;315(5):1167-77. PMID:11827484

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (25 Kb) [Save to disk] Biological Unit Coordinates (1jyr.pdb1.gz) 21 Kb Biological Unit Coordinates (1jyr.pdb2.gz) 41 Kb LPC: Ligand-Protein Contacts for 1JYR CSU: Contacts of Structural Units for 1JYR Likely Quarternary Molecular Structure file(s) for 1JYR Structure Factors (138 Kb) Retrieve 1JYR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1JYR from S2C, [Save to disk] Re-refined 1jyr structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1JYR in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1JYR

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1JYR, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1jyra_, region A [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1jyr_A] [1jyr_L] [1jyr] SWISS-PROT database: [P62993] Domain organization of [GRB2_HUMAN] by SWISSPFAM Domain found in 1JYR: [SH2 ] by SMART

Other resources with information on 1JYR

Community annotation for 1JYR at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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