1JYU Signaling Protein date Sep 13, 2001
title Xray Structure Of Grb2 Sh2 Domain
authors P.Nioche, W.Q.Liu, I.Broutin, F.Charbonnier, M.T.Latreille, M.V B.Roques, C.Garbay, A.Ducruix
compound source
Molecule: Growth Factor Receptor-Bound Protein 2
Chain: A
Fragment: Sh2 Domain
Synonym: Grb2 Adapter Protein
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: I 4 2 2
R_factor 0.231 R_Free 0.287
crystal
cell
length a length b length c angle alpha angle beta angle gamma
81.329 81.329 80.697 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.75 Å
related structures by homologous chain: 1FYR, 1GHU
Primary referenceCrystal structures of the SH2 domain of Grb2: highlight on the binding of a new high-affinity inhibitor., Nioche P, Liu WQ, Broutin I, Charbonnier F, Latreille MT, Vidal M, Roques B, Garbay C, Ducruix A, J Mol Biol 2002 Feb 1;315(5):1167-77. PMID:11827484
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (19 Kb) [Save to disk]
  • Biological Unit Coordinates (1jyu.pdb1.gz) 15 Kb
  • Biological Unit Coordinates (1jyu.pdb2.gz) 117 Kb
  • CSU: Contacts of Structural Units for 1JYU
  • Likely Quarternary Molecular Structure file(s) for 1JYU
  • Structure Factors (35 Kb)
  • Retrieve 1JYU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1JYU from S2C, [Save to disk]
  • Re-refined 1jyu structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1JYU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1JYU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1JYU, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1jyua_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1jyu] [1jyu_A]
  • SWISS-PROT database: [P62993]
  • Domain organization of [GRB2_HUMAN] by SWISSPFAM
  • Domain found in 1JYU: [SH2 ] by SMART
  • Other resources with information on 1JYU
  • Community annotation for 1JYU at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science