1K09 De Novo Protein date Sep 18, 2001
title Solution Structure Of Betacore, A Designed Water Soluble Fou Antiparallel B-Sheet Protein
authors N.Carulla, C.Woodward, G.Barany
compound source
Molecule: Core Module I
Chain: A
Engineered: Yes
 Synthetic: Yes
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Other_details: The Peptide Was Chemically Synthesized By So Peptide Chemistry. The Sequence Of The Peptide Is Naturally Bos Taurus (Bovine).;

Molecule: Core Module II
Chain: B
Engineered: Yes
Synthetic: Yes
Organism_scientific: Bos Taurus
Organism_common: Bovine
Organism_taxid: 9913
Other_details: The Peptide Was Chemically Synthesized By So Peptide Chemistry. The Sequence Of The Peptide Is Naturally Bos Taurus (Bovine).
methodSolution NMR
ligand ABA, C55, CLG, CLH, MPT, NH2 enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceBetaCore, a designed water soluble four-stranded antiparallel beta-sheet protein., Carulla N, Woodward C, Barany G, Protein Sci 2002 Jun;11(6):1539-51. PMID:12021452
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (273 Kb) [Save to disk]
  • Biological Unit Coordinates (1k09.pdb1.gz) 14 Kb
  • LPC: Ligand-Protein Contacts for 1K09
  • CSU: Contacts of Structural Units for 1K09
  • Original NMR restraints for 1K09 from PDB
  • Retrieve 1K09 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1K09 from S2C, [Save to disk]
    • View 1K09 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1K09
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1K09, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1k09a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1k09b_, region B [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1k09_A] [1k09] [1k09_B]
  • SWISS-PROT database: [P00974]
  • Domain organization of [BPT1_BOVIN] by SWISSPFAM
    • Other resources with information on 1K09
  • Community annotation for 1K09 at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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