1K12 Sugar Binding Protein date Sep 23, 2001
title Fucose Binding Lectin
authors M.A.Bianchet, E.W.Odom, G.R.Vasta, L.M.Amzel
compound source
Molecule: Lectin
Chain: A
 Organism_scientific: Anguilla Anguilla
Organism_common: European Eel
Organism_taxid: 7936
symmetry Space Group: H 3 2
R_factor 0.190 R_Free 0.239
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.540 65.540 245.136 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.90 Å
ligand CA, CL, FUC enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceA novel fucose recognition fold involved in innate immunity., Bianchet MA, Odom EW, Vasta GR, Amzel LM, Nat Struct Biol 2002 Aug;9(8):628-34. PMID:12091873
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (31 Kb) [Save to disk]
  • Biological Unit Coordinates (1k12.pdb1.gz) 27 Kb
  • LPC: Ligand-Protein Contacts for 1K12
  • CSU: Contacts of Structural Units for 1K12
  • Likely Quarternary Molecular Structure file(s) for 1K12
  • Structure Factors (173 Kb)
  • Retrieve 1K12 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1K12 from S2C, [Save to disk]
  • Re-refined 1k12 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1K12 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1K12
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1K12, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1k12a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1k12_A] [1k12]
  • SWISS-PROT database: [Q7SIC1]
  • Domain organization of [FUCL_ANGAN] by SWISSPFAM
  • Domain found in 1K12: [FTP ] by SMART
    • Other resources with information on 1K12
  • Community annotation for 1K12 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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