1K41 Isomerase date Oct 05, 2001
title Crystal Structure Of Ksi Y57s Mutant
authors S.S.Cha, B.H.Oh, G.H.Nam, D.S.Jang, T.H.Lee, K.Y.Choi
compound source
Molecule: Ketosteroid Isomerase
Chain: A, B
Synonym: Steroid Delta-Isomerase
Ec: 5.3.3.1
Engineered: Yes
Mutation: Yes
Organism_scientific: Pseudomonas Putida
Organism_taxid: 303
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.235 R_Free 0.315
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.889 73.135 51.156 90.00 89.85 90.00
method X-Ray Diffractionresolution 2.20 Å
ligand
enzyme Isomerase E.C.5.3.3.1 BRENDA
related structures by homologous chain: 1VZZ, 1W01
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceMaintenance of alpha-helical structures by phenyl rings in the active-site tyrosine triad contributes to catalysis and stability of ketosteroid isomerase from Pseudomonas putida biotype B., Nam GH, Jang DS, Cha SS, Lee TH, Kim DH, Hong BH, Yun YS, Oh BH, Choi KY, Biochemistry 2001 Nov 13;40(45):13529-37. PMID:11695900
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (43 Kb) [Save to disk]
  • Biological Unit Coordinates (1k41.pdb1.gz) 39 Kb
  • CSU: Contacts of Structural Units for 1K41
  • Likely Quarternary Molecular Structure file(s) for 1K41
  • Retrieve 1K41 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1K41 from S2C, [Save to disk]
  • View 1K41 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1K41
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1K41, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1k41a_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1k41b_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1k41] [1k41_B] [1k41_A]
  • SWISS-PROT database: [P07445]
  • Domain organization of [SDIS_PSEPU] by SWISSPFAM
  • Other resources with information on 1K41
  • Community annotation for 1K41 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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