1K4X Dna date Jun 08, 1999
title Potassium Form Of Oxy-1.5 Quadruplex Dna
authors P.Schultze, N.V.Hud, F.W.Smith, J.Feigon
compound source
Molecule: Dna (5'-D(Gpgpgpgptptptptpgpgpgpg)-3'
Chain: A, B
Engineered: Yes
Synthetic: Yes
Other_details: Sequence From Oxytricha Nova
methodSolution NMR
Primary referenceThe effect of sodium, potassium and ammonium ions on the conformation of the dimeric quadruplex formed by the Oxytricha nova telomere repeat oligonucleotide d(G(4)T(4)G(4))., Schultze P, Hud NV, Smith FW, Feigon J, Nucleic Acids Res 1999 Aug 1;27(15):3018-28. PMID:10454595
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (101 Kb) [Save to disk]
  • Biological Unit Coordinates (1k4x.pdb1.gz) 13 Kb
  • CSU: Contacts of Structural Units for 1K4X
  • Retrieve 1K4X in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1K4X from S2C, [Save to disk]
  • View 1K4X in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1K4X
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1K4X, from MSDmotif at EBI
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1k4x_B] [1k4x_A] [1k4x]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 1K4X
  • Community annotation for 1K4X at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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