1K5F Dna date Oct 10, 2001
title Solution Structure Of The S-Styrene Adduct In The Ras61 Sequ
authors C.Hennard, J.Finneman, C.M.Harris, T.M.Harris, M.P.Stone
compound source
Molecule: 5'-D(Cpgpgpapcp(Abs)Papgpapapg)-3'
Chain: A
Engineered: Yes
Other_details: N-Ras Protooncogene
 Synthetic: Yes
Other_details: This Sequence Was Generated By An Oligonucle Synthesizer;

Molecule: 5'-D(Cptptpcptptpgptpcpcpg)-3'
Chain: B
Engineered: Yes
Other_details: N-Ras Protooncogene
Synthetic: Yes
Other_details: This Sequence Was Generated By An Oligonucle Synthesizer
methodSolution NMR
ligand ABS enzyme
Primary referenceThe nonmutagenic (R)- and (S)-beta-(N(6)-adenyl)styrene oxide adducts are oriented in the major groove and show little perturbation to DNA structure., Hennard C, Finneman J, Harris CM, Harris TM, Stone MP, Biochemistry 2001 Aug 21;40(33):9780-91. PMID:11502171
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (16 Kb) [Save to disk]
  • Biological Unit Coordinates (1k5f.pdb1.gz) 13 Kb
  • LPC: Ligand-Protein Contacts for 1K5F
  • CSU: Contacts of Structural Units for 1K5F
  • Retrieve 1K5F in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1K5F from S2C, [Save to disk]
    • View 1K5F in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1K5F
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1K5F, from MSDmotif at EBI
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1k5f_B] [1k5f_A] [1k5f]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1K5F
  • Community annotation for 1K5F at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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