1K5R Signaling Protein date Oct 12, 2001
title Yap65 Ww Domain S24-Amino-Ethylsulfanyl-Acetic Acid Mutant
authors N.Ferguson, J.R.Pires, F.Toepert, C.M.Johnson, Y.P.Pan, R.Volkmer J.Schneider-Mergener, V.Daggett, H.Oschkinat, A.R.Fersht
compound source
Molecule: 65 Kda Yes-Associated Protein
Chain: A
Fragment: Ww Domain, Residues 5-44
Synonym: Yap65; Yes-Associated Protein 65 Kda
Engineered: Yes
Mutation: Yes
Other_details: 40-Peptide Construct With Synthetic Amino-Et Sulfanyl-Acetic Acid Link At Position 24;
Synthetic: Yes
Other_details: The Sequence Occurs Naturally In Humans

Molecule: Fragment Of Wbp-1
Chain: B
Engineered: Yes

Synthetic: Yes
Other_details: The Sequence Occurs Naturally In Humans
methodSolution NMR
ligand ESD, NH2 enzyme
related structures by homologous chain: 1JMQ, 1K9Q
Primary referenceUsing flexible loop mimetics to extend phi-value analysis to secondary structure interactions., Ferguson N, Pires JR, Toepert F, Johnson CM, Pan YP, Volkmer-Engert R, Schneider-Mergener J, Daggett V, Oschkinat H, Fersht A, Proc Natl Acad Sci U S A 2001 Nov 6;98(23):13008-13. PMID:11687614
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (129 Kb) [Save to disk]
  • Biological Unit Coordinates (1k5r.pdb1.gz) 13 Kb
  • LPC: Ligand-Protein Contacts for 1K5R
  • CSU: Contacts of Structural Units for 1K5R
  • Original NMR restraints for 1K5R from PDB
  • Retrieve 1K5R in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1K5R from S2C, [Save to disk]
  • View 1K5R in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1K5R
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1K5R, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1k5ra_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1k5r] [1k5r_A] [1k5r_B]
  • SWISS-PROT database: [P46937]
  • Domain organization of [YAP1_HUMAN] by SWISSPFAM
  • Domain found in 1K5R: [WW ] by SMART
  • Other resources with information on 1K5R
  • Community annotation for 1K5R at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science