1K63 Hydrolase date Oct 15, 2001
title Complex Of Hydrolytic Haloalkane Dehalogenase Linb From Sphi Paucimobilis With Ut26 2-Bromo-2-Propene-1-Ol At 1.8a Resol
authors V.A.Streltsov, J.Damborsky, M.C.J.Wilce
compound source
Molecule: 1,3,4,6-Tetrachloro-1,4-Cyclohexadiene Hydrolase
Chain: A
Synonym: Haloalkane Dehalogenase Linb
Ec: 3.8.1.5
Engineered: Yes
Organism_scientific: Sphingomonas Paucimobilis
Organism_taxid: 13689
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pmylb1
symmetry Space Group: P 21 21 21
R_factor 0.141 R_Free 0.200
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.180 68.951 80.681 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand BR, BRP, CL, MG enzyme Hydrolase E.C.3.8.1.5 BRENDA
related structures by homologous chain: 1CV2, 1K5P
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceHaloalkane dehalogenase LinB from Sphingomonas paucimobilis UT26: X-ray crystallographic studies of dehalogenation of brominated substrates., Streltsov VA, Prokop Z, Damborsky J, Nagata Y, Oakley A, Wilce MC, Biochemistry 2003 Sep 2;42(34):10104-12. PMID:12939138
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (61 Kb) [Save to disk]
  • Biological Unit Coordinates (1k63.pdb1.gz) 56 Kb
  • LPC: Ligand-Protein Contacts for 1K63
  • CSU: Contacts of Structural Units for 1K63
  • Likely Quarternary Molecular Structure file(s) for 1K63
  • Structure Factors (356 Kb)
  • Retrieve 1K63 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1K63 from S2C, [Save to disk]
  • Re-refined 1k63 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1K63 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1K63
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1K63, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1k63a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1k63] [1k63_A]
  • SWISS-PROT database: [P51698]
  • Domain organization of [LINB_PSEPA] by SWISSPFAM
  • Other resources with information on 1K63
  • Community annotation for 1K63 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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