1K7H Hydrolase date Oct 19, 2001
title Crystal Structure Of Shrimp Alkaline Phosphatase
authors M.E.De Backer, S.Mc Sweeney, H.B.Rasmussen, B.W.Riise, P.Lindley
compound source
Molecule: Alkaline Phosphatase
Chain: A, B
Ec: 3.1.3.1
Organism_scientific: Pandalus Borealis
Organism_common: Northern Shrimp
Organism_taxid: 6703
symmetry Space Group: P 43 21 2
R_factor 0.198 R_Free 0.227
crystal
cell
length a length b length c angle alpha angle beta angle gamma
171.169 171.169 84.332 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.92 Å
ligand MAE, NAG, SO4, ZN enzyme Hydrolase E.C.3.1.3.1 BRENDA
related structures by homologous chain: 1SHQ
Gene
Ontology
ChainFunctionProcessComponent
A, B
  • alkaline phosphatase activit...
  • phosphatase activity


  • Primary referenceThe 1.9 A crystal structure of heat-labile shrimp alkaline phosphatase., de Backer M, McSweeney S, Rasmussen HB, Riise BW, Lindley P, Hough E, J Mol Biol 2002 May 17;318(5):1265-74. PMID:12083516
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (166 Kb) [Save to disk]
  • Biological Unit Coordinates (1k7h.pdb1.gz) 81 Kb
  • Biological Unit Coordinates (1k7h.pdb2.gz) 160 Kb
  • LPC: Ligand-Protein Contacts for 1K7H
  • CSU: Contacts of Structural Units for 1K7H
  • Likely Quarternary Molecular Structure file(s) for 1K7H
  • Structure Factors (826 Kb)
  • Retrieve 1K7H in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1K7H from S2C, [Save to disk]
  • Re-refined 1k7h structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1K7H in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1K7H
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1K7H, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1k7ha_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1k7hb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1k7h_A] [1k7h] [1k7h_B]
  • SWISS-PROT database: [Q9BHT8]
  • Domain organization of [Q9BHT8_PANBO] by SWISSPFAM
  • Domain found in 1K7H: [alkPPc ] by SMART
  • Other resources with information on 1K7H
  • Community annotation for 1K7H at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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