1KBF Signaling Protein date Nov 06, 2001
title Solution Structure Of The Cysteine-Rich C1 Domain Of Kinase Of Ras
authors M.Zhou, D.A.Horita, D.S.Waugh, R.A.Byrd, D.K.Morrison
compound source
Molecule: Kinase Suppressor Of Ras 1
Chain: A
Fragment: Cysteine-Rich C1 Domain
Synonym: Mksr1,Protein Hb,Ksr
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Mus Musculus
Organism_common: Mouse
Organism_taxid: 10090
Gene: Ksr1, Ksr
Expression_system: Escherichia Coli Bl21
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex-3x
methodSolution NMR
ligand ZN enzyme Transferase E.C.2.7.11.1 BRENDA
related structures by homologous chain: 1KBE
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution structure and functional analysis of the cysteine-rich C1 domain of kinase suppressor of Ras (KSR)., Zhou M, Horita DA, Waugh DS, Byrd RA, Morrison DK, J Mol Biol 2002 Jan 18;315(3):435-46. PMID:11786023
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (260 Kb) [Save to disk]
  • Biological Unit Coordinates (1kbf.pdb1.gz) 14 Kb
  • LPC: Ligand-Protein Contacts for 1KBF
  • CSU: Contacts of Structural Units for 1KBF
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1KBF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1KBF from S2C, [Save to disk]
  • View 1KBF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1KBF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1KBF, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1kbfa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1kbf] [1kbf_A]
  • SWISS-PROT database: [Q61097]
  • Domain organization of [KSR1_MOUSE] by SWISSPFAM
  • Domain found in 1KBF: [C1 ] by SMART
  • Other resources with information on 1KBF
  • Community annotation for 1KBF at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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