1KDG	Oxidoreductase	date	Nov 13, 2001
title	Crystal Structure Of The Flavin Domain Of Cellobiose Dehydro
authors	B.M.Hallberg, G.Henriksson, G.Pettersson, C.Divne
compound		source
Molecule: Cellobiose Dehydrogenase Chain: A, B Fragment: C-Terminal Flavoprotein Domain Synonym: Cdh; Cellobiose-Quinone Oxidoreductase Ec: 1.1.99.18		Organism_scientific: Phanerochaete Chrysosporium Organism_taxid: 5306 Strain: K3 Other_details: Secreted
symmetry	Space Group: H 3	R_factor 0.133 R_Free 0.169
crystal cell	length a length b length c angle alpha angle beta angle gamma 185.075 185.075 81.034 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	1.50 Å
ligand	6FA, EMT, HG, MAN, NAG, UNX	enzyme	Oxidoreductase E.C.1.1.99.18 BRENDA
related structures	by homologous chain: 1PN0
Gene Ontology	Chain Function Process Component A, B
Primary reference	Crystal structure of the flavoprotein domain of the extracellular flavocytochrome cellobiose dehydrogenase., Hallberg BM, Henriksson G, Pettersson G, Divne C, J Mol Biol 2002 Jan 18;315(3):421-34. PMID:11786022

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (377 Kb) [Save to disk] Biological Unit Coordinates (1kdg.pdb1.gz) 369 Kb Biological Unit Coordinates (1kdg.pdb2.gz) 1103 Kb LPC: Ligand-Protein Contacts for 1KDG CSU: Contacts of Structural Units for 1KDG Likely Quarternary Molecular Structure file(s) for 1KDG Structure Factors (1347 Kb) Retrieve 1KDG in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1KDG from S2C, [Save to disk] Re-refined 1kdg structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1KDG in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1KDG

Ramachandran plot from PDBSum

Structure-derived information

Conformational Epitope Prediction for 1KDG 1KDGA 1KDGB from the CEP Server. Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1KDG, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1kdga1, region A:215-512,A:694-755 [Jmol] [rasmolscript] [script source]     - Domain d1kdga2, region A:513-693 [Jmol] [rasmolscript] [script source]     - Domain d1kdgb1, region B:210-512,B:694-755 [Jmol] [rasmolscript] [script source]     - Domain d1kdgb2, region B:513-693 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1kdg_A] [1kdg_B] [1kdg] SWISS-PROT database: [Q01738] Domain organization of [CDH_PHACH] by SWISSPFAM

Other resources with information on 1KDG

Community annotation for 1KDG at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---