1KFB Lyase date Nov 20, 2001
title Crystal Structure Of Alphat183v Mutant Of Tryptophan Synthas Salmonella Typhimurium With Indole Glycerol Phosphate
authors V.Kulik, M.Weyand, R.Siedel, D.Niks, D.Arac, M.F.Dunn, I.Schlichti
compound source
Molecule: Tryptophan Synthase Alpha Chain
Chain: A
Engineered: Yes
Mutation: Yes
Organism_scientific: Salmonella Typhimurium
Organism_taxid: 602
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pstb7

Molecule: Tryptophan Synthase Beta Chain
Chain: B
Engineered: Yes

Organism_scientific: Salmonella Typhimurium
Organism_taxid: 602
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pstb7
symmetry Space Group: C 1 2 1
R_factor 0.164 R_Free 0.210
crystal
cell
length a length b length c angle alpha angle beta angle gamma
181.937 60.255 67.119 90.00 94.84 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand IGP, PLP enzyme
related structures by homologous chain: 1KFJ, 1XCF, 2TYS
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceOn the role of alphaThr183 in the allosteric regulation and catalytic mechanism of tryptophan synthase., Kulik V, Weyand M, Seidel R, Niks D, Arac D, Dunn MF, Schlichting I, J Mol Biol 2002 Dec 6;324(4):677-90. PMID:12460570
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (113 Kb) [Save to disk]
  • Biological Unit Coordinates (1kfb.pdb1.gz) 211 Kb
  • LPC: Ligand-Protein Contacts for 1KFB
  • CSU: Contacts of Structural Units for 1KFB
  • Likely Quarternary Molecular Structure file(s) for 1KFB
  • Structure Factors (427 Kb)
  • Retrieve 1KFB in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1KFB from S2C, [Save to disk]
  • Re-refined 1kfb structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1KFB in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1KFB
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1KFB, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1kfba_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1kfbb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1kfb_B] [1kfb_A] [1kfb]
  • SWISS-PROT database: [P00929] [P0A2K1]
  • Domain organization of [TRPA_SALTY] [TRPB_SALTY] by SWISSPFAM
  • Other resources with information on 1KFB
  • Community annotation for 1KFB at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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