1KFO CRYSTAL STRUCTURE OF AN RNA HELIX RECOGNIZED BY A ZINC-FINGER PROTEIN: AN 18 BASE PAIR DUPLEX AT 1.6 RESOLUTION date
authors Lima, S., Hildenbrand, J., Korostelev, A., Hattman, S., Li, H.
compound source
symmetry
R_factor
R_Free 0.288
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 1.60
ligand 5BU enzyme
Primary referenceCrystal structure of an RNA helix recognized by a zinc-finger protein: an 18-bp duplex at 1.6 A resolution., Lima S, Hildenbrand J, Korostelev A, Hattman S, Li H, RNA 2002 Jul;8(7):924-32. PMID:12166647
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (13 Kb) [Save to disk]
  • Biological Unit Coordinates (1kfo.pdb1.gz) 17 Kb
  • LPC: Ligand-Protein Contacts for 1KFO
  • CSU: Contacts of Structural Units for 1KFO
  • Likely Quarternary Molecular Structure file(s) for 1KFO
  • Retrieve 1KFO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1KFO from S2C, [Save to disk]
    • View 1KFO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1KFO
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1KFO, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1kfo] [1kfo_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 1KFO
  • Community annotation for 1KFO at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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