1KJK Viral Protein date Dec 04, 2001
title Solution Structure Of The Lambda Integrase Amino-Terminal Do
authors J.M.Wojciak, D.Sarkar, A.Landy, R.T.Clubb
compound source
Molecule: Integrase
Chain: A
Fragment: Amino-Terminal Domain (Residues 1-64)
Engineered: Yes
Organism_scientific: Enterobacteria Phage Lambda
Organism_taxid: 10710
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pimc104
methodSolution NMR
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceArm-site binding by lambda -integrase: solution structure and functional characterization of its amino-terminal domain., Wojciak JM, Sarkar D, Landy A, Clubb RT, Proc Natl Acad Sci U S A 2002 Mar 19;99(6):3434-9. PMID:11904406
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (328 Kb) [Save to disk]
  • Biological Unit Coordinates (1kjk.pdb1.gz) 13 Kb
  • CSU: Contacts of Structural Units for 1KJK
  • Retrieve 1KJK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1KJK from S2C, [Save to disk]
  • View 1KJK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1KJK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1KJK, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1kjka_, region A [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1kjk_A] [1kjk]
  • SWISS-PROT database: [P03700]
  • Domain organization of [VINT_LAMBD] by SWISSPFAM
  • Other resources with information on 1KJK
  • Community annotation for 1KJK at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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