1KKG Structural Genomics date Dec 07, 2001
title Nmr Structure Of Ribosome-Binding Factor A (Rbfa)
authors Y.J.Huang, G.V.T.Swapna, P.K.Rajan, H.Ke, B.Xia, K.Shukla, M.Inouy G.T.Montelione, Northeast Structural Genomics Consortium (Ne
compound source
Molecule: Ribosome-Binding Factor A
Chain: A
Synonym: Rbfa, Cold-Shock Adaptation Protein
Engineered: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Rbfa
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet11a
methodSolution NMR
related structures by homologous chain: 1JOS
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceSolution NMR structure of ribosome-binding factor A (RbfA), a cold-shock adaptation protein from Escherichia coli., Huang YJ, Swapna GV, Rajan PK, Ke H, Xia B, Shukla K, Inouye M, Montelione GT, J Mol Biol 2003 Mar 21;327(2):521-36. PMID:12628255
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (470 Kb) [Save to disk]
  • Biological Unit Coordinates (1kkg.pdb1.gz) 29 Kb
  • CSU: Contacts of Structural Units for 1KKG
  • Original NMR restraints for 1KKG from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1KKG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1KKG from S2C, [Save to disk]
    • View 1KKG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1KKG
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1KKG, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1kkga_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1kkg_A] [1kkg]
  • SWISS-PROT database: [P0A7G2]
  • Domain organization of [RBFA_ECOLI] by SWISSPFAM
    • Other resources with information on 1KKG
  • Community annotation for 1KKG at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science