1KLK Oxidoreductase date Dec 12, 2001
title Crystal Structure Of Pneumocystis Carinii Dihydrofolate Redu Ternary Complex With Pt653 And Nadph
authors V.Cody, N.Galitsky, J.R.Luft, W.Pangborn, A.Rosowsky, S.F.Queener
compound source
Molecule: Dihydrofolate Reductase
Chain: A
Ec: 1.5.1.3
Engineered: Yes
Organism_scientific: Pneumocystis Carinii
Organism_taxid: 4754
Organ: Lung
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pt7-7
symmetry Space Group: P 1 21 1
R_factor 0.196 R_Free 0.289
crystal
cell
length a length b length c angle alpha angle beta angle gamma
36.836 43.138 59.319 90.00 95.03 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand NDP, PMD enzyme Oxidoreductase E.C.1.5.1.3 BRENDA
related structures by homologous chain: 1DAJ, 3CD2
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure-based enzyme inhibitor design: modeling studies and crystal structure analysis of Pneumocystis carinii dihydrofolate reductase ternary complex with PT653 and NADPH., Cody V, Galitsky N, Luft JR, Pangborn W, Rosowsky A, Queener SF, Acta Crystallogr D Biol Crystallogr 2002 Jun;58(Pt 6 Pt 2):946-54. PMID:12037296
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (41 Kb) [Save to disk]
  • Biological Unit Coordinates (1klk.pdb1.gz) 36 Kb
  • LPC: Ligand-Protein Contacts for 1KLK
  • CSU: Contacts of Structural Units for 1KLK
  • Likely Quarternary Molecular Structure file(s) for 1KLK
  • Retrieve 1KLK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1KLK from S2C, [Save to disk]
  • View 1KLK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1KLK
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1KLK, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1klka_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1klk] [1klk_A]
  • SWISS-PROT database: [P16184]
  • Domain organization of [DYR_PNECA] by SWISSPFAM
  • Other resources with information on 1KLK
  • Community annotation for 1KLK at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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