1KLN Transferase Dna date May 24, 1994
title Dna Polymerase I Klenow Fragment (E.C.2.7.7.7) Mutantdna Co
authors L.S.Beese, V.Derbyshire, T.A.Steitz
compound source
Molecule: Dna (5'-D(Gpcpcptpcpgpcpgpgpcpgpgpc)
Chain: B
Engineered: Yes
 Synthetic: Yes

Molecule: Dna (5'-D(Gpcpcpgpcpgpapgpgpc)-3')
Chain: C
Engineered: Yes
Synthetic: Yes

Molecule: Protein (Dna Polymerase I Klenow Fragment (E.C.2.
Chain: A
Mutation: Yes
Organism_scientific: Escherichia Coli
Organism_taxid: 562
symmetry Space Group: P 43
R_factor 0.230 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
104.300 104.300 86.000 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.20 Å
ligand ZN enzyme Transferase E.C.2 BRENDA
note 1KLN (Molecule of the Month:pdb3)
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of DNA polymerase I Klenow fragment bound to duplex DNA., Beese LS, Derbyshire V, Steitz TA, Science 1993 Apr 16;260(5106):352-5. PMID:8469987
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk]
  • Biological Unit Coordinates (1kln.pdb1.gz) 88 Kb
  • LPC: Ligand-Protein Contacts for 1KLN
  • CSU: Contacts of Structural Units for 1KLN
  • Likely Quarternary Molecular Structure file(s) for 1KLN
  • Retrieve 1KLN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1KLN from S2C, [Save to disk]
    • View 1KLN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1KLN
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1KLN, from MSDmotif at EBI
  • Genome occurence of 1KLN's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1klna1, region A:324-518 [Jmol] [rasmolscript] [script source]
        - Domain d1klna2, region A:519-928 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1kln_B] [1kln] [1kln_A] [1kln_C]
  • SWISS-PROT database: [P00582]
  • Domain organization of [DPO1_ECOLI] by SWISSPFAM
  • Domains found in 1KLN: [35EXOc] [POLAc ] by SMART
    • Other resources with information on 1KLN
  • Community annotation for 1KLN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

    • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science