1KNZ Viral Protein Rna date Dec 19, 2001
title Recognition Of The Rotavirus Mrna 3' Consensus By An Asymmet Homodimer
authors R.C.Deo, C.M.Groft, K.R.Rajashankar, S.K.Burley
compound source
Molecule: 5'-R(Upgpapcpc)-3'
Chain: W, X, Y, Z
Engineered: Yes
Synthetic: Yes

Molecule: Nonstructural Rna-Binding Protein 34
Chain: A, B, C, D, I, J, M, N
Fragment: N-Terminal Domain
Synonym: Ns34, Nsp3
Engineered: Yes

Organism_scientific: Simian Rotavirus Asa11
Organism_taxid: 10923
Strain: Sa-11
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pgex6p1
symmetry Space Group: P 1
R_factor 0.228 R_Free 0.280
crystal
cell
length a length b length c angle alpha angle beta angle gamma
40.275 85.359 96.051 89.99 90.00 90.05
method X-Ray Diffractionresolution 2.45 Å
Gene
Ontology
ChainFunctionProcessComponent
A, J, N, B, M, C, D, I


Primary referenceRecognition of the rotavirus mRNA 3' consensus by an asymmetric NSP3 homodimer., Deo RC, Groft CM, Rajashankar KR, Burley SK, Cell 2002 Jan 11;108(1):71-81. PMID:11792322
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (195 Kb) [Save to disk]
  • Biological Unit Coordinates (1knz.pdb1.gz) 49 Kb
  • Biological Unit Coordinates (1knz.pdb2.gz) 49 Kb
  • Biological Unit Coordinates (1knz.pdb3.gz) 49 Kb
  • Biological Unit Coordinates (1knz.pdb4.gz) 48 Kb
  • CSU: Contacts of Structural Units for 1KNZ
  • Likely Quarternary Molecular Structure file(s) for 1KNZ
  • Retrieve 1KNZ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1KNZ from S2C, [Save to disk]
  • View 1KNZ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1KNZ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1KNZ, from MSDmotif at EBI
  • Structure summary from SCOR (Structural Classification of RNA)
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1knza_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1knzb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1knzc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1knzd_, region D [Jmol] [rasmolscript] [script source]
        - Domain d1knzi_, region I [Jmol] [rasmolscript] [script source]
        - Domain d1knzj_, region J [Jmol] [rasmolscript] [script source]
        - Domain d1knzm_, region M [Jmol] [rasmolscript] [script source]
        - Domain d1knzn_, region N [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1knz_B] [1knz_I] [1knz_Y] [1knz_D] [1knz_M] [1knz_A] [1knz_J] [1knz_Z] [1knz_W] [1knz_X] [1knz] [1knz_C] [1knz_N]
  • SWISS-PROT database: [P03536]
  • Domain organization of [NSP3_ROTS1] by SWISSPFAM
  • Other resources with information on 1KNZ
  • Community annotation for 1KNZ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science