1KO6 Crystal Structure of C-terminal Autoproteolytic Domain of Nucleoporin Nup98 date
authors Hodel, A.E., Hodel, M.R., Griffis, E.R., Hennig, K.A., Ratner, G.A., Songli, X., Powers, M.A.
compound source
symmetry
R_factor
R_Free 0.271
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.00
Gene
Ontology
ChainFunctionProcessComponent
A, C


Primary referenceThe three-dimensional structure of the autoproteolytic, nuclear pore-targeting domain of the human nucleoporin Nup98., Hodel AE, Hodel MR, Griffis ER, Hennig KA, Ratner GA, Xu S, Powers MA, Mol Cell 2002 Aug;10(2):347-58. PMID:12191480
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (48 Kb) [Save to disk]
  • Biological Unit Coordinates (1ko6.pdb1.gz) 42 Kb
  • CSU: Contacts of Structural Units for 1KO6
  • Likely Quarternary Molecular Structure file(s) for 1KO6
  • Retrieve 1KO6 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1KO6 from S2C, [Save to disk]
  • View 1KO6 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1KO6
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1KO6, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ko6.1, region A:,B [Jmol] [rasmolscript] [script source]
        - Domain d1ko6.2, region C:,D [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ko6_B] [1ko6] [1ko6_C] [1ko6_D] [1ko6_A]
  • SWISS-PROT database: [P52948]
  • Domain organization of [NUP98_HUMAN] by SWISSPFAM
  • Other resources with information on 1KO6
  • Community annotation for 1KO6 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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