1KPH Transferase date Dec 30, 2001
title Crystal Structure Of Mycolic Acid Cyclopropane Synthase Cmaa Complexed With Sah And Dddmab
authors C.C.Huang, C.V.Smith, W.R.Jacobs Jr., M.S.Glickman, J.C.Sacchet Structural Genomics Consortium (Tbsgc)
compound source
Molecule: Cyclopropane-Fatty-Acyl-Phospholipid Synthase 1
Chain: A, B, C, D
Synonym: Cyclopropane Fatty Acid Synthase; Cfa Synthase; Cy Mycolic Acid Synthase; Cmaa1;
Ec: 2.1.1.79
Engineered: Yes
Organism_scientific: Mycobacterium Tuberculosis
Organism_taxid: 1773
Gene: Cmaa1
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Pet
Expression_system_plasmid: Pet30b(Cmaa1)
symmetry Space Group: P 43
R_factor 0.194 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
77.623 77.623 174.878 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand 10A, CO3, SAH enzyme Transferase E.C.2.1.1.79 BRENDA
related structures by homologous chain: 1KPG, 1L1E
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceCrystal structures of mycolic acid cyclopropane synthases from Mycobacterium tuberculosis., Huang CC, Smith CV, Glickman MS, Jacobs WR Jr, Sacchettini JC, J Biol Chem 2002 Mar 29;277(13):11559-69. PMID:11756461
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (203 Kb) [Save to disk]
  • Biological Unit Coordinates (1kph.pdb1.gz) 51 Kb
  • Biological Unit Coordinates (1kph.pdb2.gz) 52 Kb
  • Biological Unit Coordinates (1kph.pdb3.gz) 53 Kb
  • Biological Unit Coordinates (1kph.pdb4.gz) 52 Kb
  • LPC: Ligand-Protein Contacts for 1KPH
  • CSU: Contacts of Structural Units for 1KPH
  • Likely Quarternary Molecular Structure file(s) for 1KPH
  • Retrieve 1KPH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1KPH from S2C, [Save to disk]
  • View 1KPH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1KPH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1KPH, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1kpha_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1kphb_, region B [Jmol] [rasmolscript] [script source]
        - Domain d1kphc_, region C [Jmol] [rasmolscript] [script source]
        - Domain d1kphd_, region D [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1kph_A] [1kph_C] [1kph] [1kph_B] [1kph_D]
  • SWISS-PROT database: [P0C5C2]
  • Domain organization of [CFA1_MYCTU] by SWISSPFAM
  • Other resources with information on 1KPH
  • Community annotation for 1KPH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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