1KSW	Transferase	date	Jan 14, 2002
title	Structure Of Human C-Src Tyrosine Kinase (Thr338gly Mutant) With N6-Benzyl Adp
authors	L.A.Witucki, X.Huang, K.Shah, Y.Liu, S.Kyin, M.J.Eck, K.M.Shokat
compound		source
Molecule: Proto-Oncogene Tyrosine-Protein Kinase Src Chain: A Fragment: Sh3, Sh2 And Kinase Domains Synonym: C-Src Ec: 2.7.1.112 Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus Expression_system_vector: Pvl1392
symmetry	Space Group: P 21 21 21	R_factor 0.231 R_Free 0.294
crystal cell	length a length b length c angle alpha angle beta angle gamma 50.810 87.680 106.280 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	2.80 Å
ligand	NBS, PTR	enzyme	Transferase E.C.2.7.1.112 BRENDA
related structures	by homologous chain: 1AVZ, 1HCS, 1SPS
Gene Ontology	Chain Function Process Component A
Primary reference	Mutant tyrosine kinases with unnatural nucleotide specificity retain the structure and phospho-acceptor specificity of the wild-type enzyme., Witucki LA, Huang X, Shah K, Liu Y, Kyin S, Eck MJ, Shokat KM, Chem Biol 2002 Jan;9(1):25-33. PMID:11841936

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (79 Kb) [Save to disk] Biological Unit Coordinates (1ksw.pdb1.gz) 75 Kb LPC: Ligand-Protein Contacts for 1KSW CSU: Contacts of Structural Units for 1KSW Likely Quarternary Molecular Structure file(s) for 1KSW Structure Factors (126 Kb) Retrieve 1KSW in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1KSW from S2C, [Save to disk] Re-refined 1ksw structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1KSW in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1KSW

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1KSW, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1kswa2, region A:146-248 [Jmol] [rasmolscript] [script source]     - Domain d1kswa3, region A:249-533 [Jmol] [rasmolscript] [script source]     - Domain d1kswa1, region A:84-145 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ksw] [1ksw_A] SWISS-PROT database: [P12931] Domain organization of [SRC_HUMAN] by SWISSPFAM Domains found in 1KSW: [SH2] [SH3] [TyrKc ] by SMART

Other resources with information on 1KSW

Community annotation for 1KSW at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---