1KTI Transferase date Jan 16, 2002
title Binding Of 100 Mm N-Acetyl-N'-Beta-D-Glucopyranosyl Urea To Phosphorylase B: Kinetic And Crystallographic Studies
authors N.G.Oikonomakos, M.Kosmopoulou, S.E.Zographos, D.D.Leonidas, E.D.Chrysina, L.Somsak, V.Nagy, J.P.Praly, T.Docsa, B.Toth, P.Ger
compound source
Molecule: Glycogen Phosphorylase, Muscle Form
Chain: A
Synonym: Myophosphorylase
Ec: 2.4.1.1
Organism_scientific: Oryctolagus Cuniculus
Organism_common: Rabbit
Organism_taxid: 9986
Other_details: Muscle
symmetry Space Group: P 43 21 2
R_factor 0.191 R_Free 0.219
crystal
cell
length a length b length c angle alpha angle beta angle gamma
128.380 128.380 116.160 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.97 Å
ligand AZC, PLP BindingDB enzyme Transferase E.C.2.4.1.1 BRENDA
note 1KTI supersedes 1K0Q
related structures by homologous chain: 1P2D, 2GPN
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceBinding of N-acetyl-N '-beta-D-glucopyranosyl urea and N-benzoyl-N '-beta-D-glucopyranosyl urea to glycogen phosphorylase b: kinetic and crystallographic studies., Oikonomakos NG, Kosmopoulou M, Zographos SE, Leonidas DD, Chrysina ED, Somsak L, Nagy V, Praly JP, Docsa T, Toth B, Gergely P, Eur J Biochem 2002 Mar;269(6):1684-96. PMID:11895439
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (140 Kb) [Save to disk]
  • Biological Unit Coordinates (1kti.pdb1.gz) 269 Kb
  • Biological Unit Coordinates (1kti.pdb2.gz) 136 Kb
  • Biological Unit Coordinates (1kti.pdb3.gz) 269 Kb
  • LPC: Ligand-Protein Contacts for 1KTI
  • CSU: Contacts of Structural Units for 1KTI
  • Likely Quarternary Molecular Structure file(s) for 1KTI
  • Retrieve 1KTI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1KTI from S2C, [Save to disk]
  • View 1KTI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1KTI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1KTI, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ktia_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1kti] [1kti_A]
  • SWISS-PROT database: [P00489]
  • Domain organization of [PYGM_RABIT] by SWISSPFAM
  • Other resources with information on 1KTI
  • Community annotation for 1KTI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science