1KV1 Transferase date Jan 23, 2002
title P38 Map Kinase In Complex With Inhibitor 1
authors C.Pargellis, L.Tong, L.Churchill, P.F.Cirillo, T.Gilmore, A.G.Gra P.M.Grob, E.R.Hickey, N.Moss, S.Pav, J.Regan
compound source
Molecule: P38 Map Kinase
Chain: A
Synonym: Mitogen-Activated Protein Kinase P38, Mitogen-Acti Protein Kinase 14;
Ec: 2.7.1.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.221 R_Free 0.284
crystal
cell
length a length b length c angle alpha angle beta angle gamma
65.000 74.400 77.100 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand BMU BindingDB enzyme Transferase E.C.2.7.1 BRENDA
related structures by homologous chain: 1OUY, 1W83
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceInhibition of p38 MAP kinase by utilizing a novel allosteric binding site., Pargellis C, Tong L, Churchill L, Cirillo PF, Gilmore T, Graham AG, Grob PM, Hickey ER, Moss N, Pav S, Regan J, Nat Struct Biol 2002 Apr;9(4):268-72. PMID:11896401
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (59 Kb) [Save to disk]
  • Biological Unit Coordinates (1kv1.pdb1.gz) 55 Kb
  • LPC: Ligand-Protein Contacts for 1KV1
  • CSU: Contacts of Structural Units for 1KV1
  • Likely Quarternary Molecular Structure file(s) for 1KV1
  • Retrieve 1KV1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1KV1 from S2C, [Save to disk]
  • View 1KV1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1KV1
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1KV1, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1kv1a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1kv1] [1kv1_A]
  • SWISS-PROT database: [Q16539]
  • Domain organization of [MK14_HUMAN] by SWISSPFAM
  • Domain found in 1KV1: [S_TKc ] by SMART
  • Other resources with information on 1KV1
  • Community annotation for 1KV1 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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