1KV9 Oxidoreductase date Jan 25, 2002
title Structure At 1.9 A Resolution Of A Quinohemoprotein Alcohol Dehydrogenase From Pseudomonas Putida Hk5
authors Z.W.Chen, K.Matsushita, T.Yamashita, T.Fujii, H.Toyama, O.Adachi H.D.Bellamy, F.S.Mathews
compound source
Molecule: Type II Quinohemoprotein Alcohol Dehydrogenase
Chain: A
Ec: 1.1.99.-
 Organism_scientific: Pseudomonas Putida
Organism_taxid: 303
symmetry Space Group: P 1
R_factor 0.154 R_Free 0.189
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.807 57.437 67.523 89.65 69.34 68.39
method X-Ray Diffractionresolution 1.90 Å
ligand ACN, CA, EPE, GOL, HEC, PQQ enzyme Oxidoreductase E.C.1.1.99 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • electron transfer activity


    • Primary referenceStructure at 1.9 A resolution of a quinohemoprotein alcohol dehydrogenase from Pseudomonas putida HK5., Chen ZW, Matsushita K, Yamashita T, Fujii TA, Toyama H, Adachi O, Bellamy HD, Mathews FS, Structure (Camb) 2002 Jun;10(6):837-49. PMID:12057198
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (122 Kb) [Save to disk]
  • Biological Unit Coordinates (1kv9.pdb1.gz) 116 Kb
  • LPC: Ligand-Protein Contacts for 1KV9
  • CSU: Contacts of Structural Units for 1KV9
  • Likely Quarternary Molecular Structure file(s) for 1KV9
  • Structure Factors (493 Kb)
  • Retrieve 1KV9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1KV9 from S2C, [Save to disk]
  • Re-refined 1kv9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1KV9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1KV9
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1KV9, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1kv9a2, region A:1-560 [Jmol] [rasmolscript] [script source]
        - Domain d1kv9a1, region A:561-664 [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1kv9] [1kv9_A]
  • SWISS-PROT database: [Q8GR64]
  • Domain organization of [Q8GR64_PSEPU] by SWISSPFAM
  • Domain found in 1KV9: [PQQ ] by SMART
    • Other resources with information on 1KV9
  • Community annotation for 1KV9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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