1KXX Hydrolase date Nov 22, 1996
title Analysis Of The Stabilization Of Hen Lysozyme With The Helix And Charged Side Chains
authors H.Motoshima, T.Ohmura, T.Ueda, T.Imoto
compound source
Molecule: Lysozyme
Chain: A
Ec: 3.2.1.17
Engineered: Yes
Mutation: Yes
Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
Gene: Hen Lysozyme
Expression_system: Saccharomyces Cerevisiae
Expression_system_common: Baker'S Yeast
Expression_system_taxid: 4932
Expression_system_strain: Saccharomyces Cerevisiae
Expression_system_vector_type: Yep
Expression_system_vector: Pam82
Expression_system_gene: Hen Lysozyme
symmetry Space Group: P 43 21 2
R_factor 0.177 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.170 79.170 38.000 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.71 Å
ligand
enzyme Hydrolase E.C.3.2.1.17 BRENDA
related structures by homologous chain: 1H87, 1LZ9
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceAnalysis of the stabilization of hen lysozyme by helix macrodipole and charged side chain interaction., Motoshima H, Mine S, Masumoto K, Abe Y, Iwashita H, Hashimoto Y, Chijiiwa Y, Ueda T, Imoto T, J Biochem (Tokyo) 1997 Jun;121(6):1076-81. PMID:9354379
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (25 Kb) [Save to disk]
  • Biological Unit Coordinates (1kxx.pdb1.gz) 21 Kb
  • CSU: Contacts of Structural Units for 1KXX
  • Likely Quarternary Molecular Structure file(s) for 1KXX
  • Structure Factors (83 Kb)
  • Retrieve 1KXX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1KXX from S2C, [Save to disk]
  • Re-refined 1kxx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1KXX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1KXX
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1KXX, from MSDmotif at EBI
  • Genome occurence of 1KXX's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1kxx__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1kxx] [1kxx_A]
  • SWISS-PROT database: [P00698]
  • Domain organization of [LYSC_CHICK] by SWISSPFAM
  • Domain found in 1KXX: [LYZ1 ] by SMART
  • Other resources with information on 1KXX
  • Community annotation for 1KXX at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science