1KY8 Oxidoreductase date Feb 04, 2002
title Crystal Structure Of The Non-Phosphorylating Glyceraldehyde- Phosphate Dehydrogenase
authors E.Pohl, N.Brunner, M.Wilmanns, R.Hensel
compound source
Molecule: Glyceraldehyde-3-Phosphate Dehydrogenase
Chain: A
Synonym: Nadp+
Ec: 1.2.1.9
Engineered: Yes
Organism_scientific: Thermoproteus Tenax
Organism_taxid: 2271
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 62 2 2
R_factor 0.208 R_Free 0.242
crystal
cell
length a length b length c angle alpha angle beta angle gamma
185.200 185.200 132.100 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.40 Å
ligand NA, NAP enzyme Oxidoreductase E.C.1.2.1.9 BRENDA
related structures by homologous chain: 1UXQ, 1UXV
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe crystal structure of the allosteric non-phosphorylating glyceraldehyde-3-phosphate dehydrogenase from the hyperthermophilic archaeum Thermoproteus tenax., Pohl E, Brunner N, Wilmanns M, Hensel R, J Biol Chem 2002 May 31;277(22):19938-45. Epub 2002 Feb 12. PMID:11842090
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (89 Kb) [Save to disk]
  • Biological Unit Coordinates (1ky8.pdb1.gz) 331 Kb
  • LPC: Ligand-Protein Contacts for 1KY8
  • CSU: Contacts of Structural Units for 1KY8
  • Likely Quarternary Molecular Structure file(s) for 1KY8
  • Structure Factors (435 Kb)
  • Retrieve 1KY8 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1KY8 from S2C, [Save to disk]
  • Re-refined 1ky8 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1KY8 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1KY8
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1KY8, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ky8a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ky8] [1ky8_A]
  • SWISS-PROT database: [O57693]
  • Domain organization of [O57693_THETE] by SWISSPFAM
  • Other resources with information on 1KY8
  • Community annotation for 1KY8 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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