1L4S Translation date Mar 05, 2002
title Solution Structure Of Ribosome Associated Factor Y
authors K.Ye, A.Serganov, W.Hu, D.J.Patel
compound source
Molecule: Protein Yfia
Chain: A
Synonym: Ribosome Associated Factor Y
Engineered: Yes
 Organism_scientific: Escherichia Coli
Organism_taxid: 562
Gene: Yfia
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet29b
methodSolution NMR
related structures by homologous chain: 1N3G
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceRibosome-associated factor Y adopts a fold resembling a double-stranded RNA binding domain scaffold., Ye K, Serganov A, Hu W, Garber M, Patel DJ, Eur J Biochem 2002 Nov;269(21):5182-91. PMID:12392550
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (602 Kb) [Save to disk]
  • Biological Unit Coordinates (1l4s.pdb1.gz) 30 Kb
  • CSU: Contacts of Structural Units for 1L4S
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1L4S in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1L4S from S2C, [Save to disk]
    • View 1L4S in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1L4S
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1L4S, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1l4sa_, region A [Jmol] [rasmolscript] [script source]
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1l4s_A] [1l4s]
  • SWISS-PROT database: [P0AD49]
  • Domain organization of [RAIA_ECOLI] by SWISSPFAM
    • Other resources with information on 1L4S
  • Community annotation for 1L4S at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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