1L6N Viral Protein date Mar 11, 2002
title Structure Of The N-Terminal 283-Residue Fragment Of The Hiv- Polyprotein
authors C.Tang, Y.Ndassa, M.F.Summers
compound source
Molecule: Gag Polyprotein
Chain: A
Fragment: Residues 1-283
Engineered: Yes
 Organism_scientific: Human Immunodeficiency Virus 1
Organism_taxid: 11676
Gene: Gag
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P11a
methodSolution NMR
related structures by homologous chain: 2HMX
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of the N-terminal 283-residue fragment of the immature HIV-1 Gag polyprotein., Tang C, Ndassa Y, Summers MF, Nat Struct Biol 2002 Jul;9(7):537-43. PMID:12032547
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1541 Kb) [Save to disk]
  • Biological Unit Coordinates (1l6n.pdb1.gz) 76 Kb
  • CSU: Contacts of Structural Units for 1L6N
  • Original NMR restraints for 1L6N from PDB
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1L6N in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1L6N from S2C, [Save to disk]
    • View 1L6N in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1L6N
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1L6N, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1l6na2, region A:131-289 [Jmol] [rasmolscript] [script source]
        - Domain d1l6na1, region A:2-130 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1l6n_A] [1l6n]
  • SWISS-PROT database: [Q72497]
  • Domain organization of [Q72497_9HIV1] by SWISSPFAM
    • Other resources with information on 1L6N
  • Community annotation for 1L6N at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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