1L6R	Structural Genomics, Unknown Function	date	Mar 13, 2002
title	Crystal Structure Of Thermoplasma Acidophilum 0175 (Apc0014)
authors	Y.Kim, A.Joachimiak, A.M.Edwards, X.Xu, M.Pennycooke, J.Gu, F.Cheu D.Christendat, Midwest Center For Structural Genomics (Mcsg)
compound		source
Molecule: Hypothetical Protein Ta0175 Chain: A, B Engineered: Yes		Organism_scientific: Thermoplasma Acidophilum Organism_taxid: 2303 Gene: Ta0175 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: I 2 2 2	R_factor 0.171 R_Free 0.195
crystal cell	length a length b length c angle alpha angle beta angle gamma 88.240 99.244 113.781 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.40 Å
ligand	CA, FMT	enzyme
related structures	by homologous chain: 1KYT
Gene Ontology	Chain Function Process Component A, B
Primary reference	Structure- and function-based characterization of a new phosphoglycolate phosphatase from Thermoplasma acidophilum., Kim Y, Yakunin AF, Kuznetsova E, Xu X, Pennycooke M, Gu J, Cheung F, Proudfoot M, Arrowsmith CH, Joachimiak A, Edwards AM, Christendat D, J Biol Chem 2004 Jan 2;279(1):517-26. Epub 2003 Oct 10. PMID:14555659

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (94 Kb) [Save to disk] Biological Unit Coordinates (1l6r.pdb1.gz) 88 Kb Biological Unit Coordinates (1l6r.pdb2.gz) 89 Kb LPC: Ligand-Protein Contacts for 1L6R CSU: Contacts of Structural Units for 1L6R Likely Quarternary Molecular Structure file(s) for 1L6R Structure Factors (1199 Kb) Retrieve 1L6R in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1L6R from S2C, [Save to disk] Re-refined 1l6r structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1L6R in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1L6R

Ramachandran plot from PDBSum

Structure-derived information

Conformational Epitope Prediction for 1L6R 1L6RA 1L6RB from the CEP Server. Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1L6R, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1l6ra_, region A [Jmol] [rasmolscript] [script source]     - Domain d1l6rb_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1l6r_B] [1l6r_A] [1l6r] SWISS-PROT database: [Q9HLQ2] Domain organization of [PGP_THEAC] by SWISSPFAM

Other resources with information on 1L6R

Community annotation for 1L6R at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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