1L8Z Solution structure of HMG box 5 in human upstream binding factor date
authors Yang, W., Xu, Y., Wu, J., Zeng, W., Shi, Y.
compound source
symmetry
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
related structures by homologous chain: 1L8Y
Primary referenceSolution structure and DNA binding property of the fifth HMG box domain in comparison with the first HMG box domain in human upstream binding factor., Yang W, Xu Y, Wu J, Zeng W, Shi Y, Biochemistry 2003 Feb 25;42(7):1930-8. PMID:12590579
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (31 Kb) [Save to disk]
  • Biological Unit Coordinates (1l8z.pdb1.gz) 26 Kb
  • CSU: Contacts of Structural Units for 1L8Z
  • Experimental data, such as chemical shifts, at BioMagResBank (BMRB)
  • NMR Restraints Grid from BioMagResBank (BMRB)
  • Retrieve 1L8Z in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1L8Z from S2C, [Save to disk]
  • View 1L8Z in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1L8Z
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1L8Z, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1l8za_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1l8z_A] [1l8z]
  • SWISS-PROT database: [P17480]
  • Domain organization of [UBF1_HUMAN] by SWISSPFAM
  • Domain found in 1L8Z: [HMG ] by SMART
  • Other resources with information on 1L8Z
  • Community annotation for 1L8Z at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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