1LAT Transcription Dna date Dec 18, 1995
title Glucocorticoid Receptor Mutantdna Complex
authors D.T.Gewirth, P.B.Sigler
compound source
Molecule: Dna (5'- D(Tptpcpcpapgpapapcpaptpgptptpcptpg Pgpa
Chain: C, D
Engineered: Yes
Synthetic: Yes

Molecule: Glucocorticoid Receptor
Chain: A, B
Engineered: Yes
Mutation: Yes

Organism_scientific: Rattus Norvegicus
Organism_common: Rat
Organism_taxid: 10116
Gene: Nr3c1, Grl
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_plasmid: Pt7-Trgr3
symmetry Space Group: P 21 21 21
R_factor 0.195 R_Free 0.281
crystal
cell
length a length b length c angle alpha angle beta angle gamma
38.720 76.070 118.880 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand ZN enzyme
related structures by homologous chain: 1R4O
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceThe basis for half-site specificity explored through a non-cognate steroid receptor-DNA complex., Gewirth DT, Sigler PB, Nat Struct Biol 1995 May;2(5):386-94. PMID:7664096
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (1lat.pdb1.gz) 45 Kb
  • LPC: Ligand-Protein Contacts for 1LAT
  • CSU: Contacts of Structural Units for 1LAT
  • Likely Quarternary Molecular Structure file(s) for 1LAT
  • Structure Factors (168 Kb)
  • Retrieve 1LAT in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1LAT from S2C, [Save to disk]
  • Re-refined 1lat structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1LAT in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1LAT
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1LAT, from MSDmotif at EBI
  • Genome occurence of 1LAT's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1lata_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1latb_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1lat_C] [1lat] [1lat_D] [1lat_B] [1lat_A]
  • SWISS-PROT database: [P06536]
  • Domain organization of [GCR_RAT] by SWISSPFAM
  • Domain found in 1LAT: [ZnF_C4 ] by SMART
  • Other resources with information on 1LAT
  • Community annotation for 1LAT at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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