1LBF Lyase date Apr 03, 2002
title Crystal Structure Of Indole-3-Glycerol Phosphate Syntase (Ig Reduced 1-(O-Caboxyphenylamino)-1-Deoxyribulose 5-Phosphate
authors M.Hennig, B.Darimont, K.Kirschner, J.N.Jansonius
compound source
Molecule: Indole-3-Glycerol Phosphate Synthase
Chain: A
Ec: 4.1.1.48
Engineered: Yes
Organism_scientific: Sulfolobus Solfataricus
Organism_taxid: 2287
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.152 R_Free 0.225
crystal
cell
length a length b length c angle alpha angle beta angle gamma
57.800 73.700 104.400 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.05 Å
ligand 137 enzyme Lyase E.C.4.1.1.48 BRENDA
related structures by homologous chain: 1IGS, 1LBL
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceThe catalytic mechanism of indole-3-glycerol phosphate synthase: crystal structures of complexes of the enzyme from Sulfolobus solfataricus with substrate analogue, substrate, and product., Hennig M, Darimont BD, Jansonius JN, Kirschner K, J Mol Biol 2002 Jun 7;319(3):757-66. PMID:12054868
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (1lbf.pdb1.gz) 46 Kb
  • LPC: Ligand-Protein Contacts for 1LBF
  • CSU: Contacts of Structural Units for 1LBF
  • Likely Quarternary Molecular Structure file(s) for 1LBF
  • Retrieve 1LBF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1LBF from S2C, [Save to disk]
  • View 1LBF in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1LBF
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1LBF, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1lbfa_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1lbf] [1lbf_A]
  • SWISS-PROT database: [Q06121]
  • Domain organization of [TRPC_SULSO] by SWISSPFAM
  • Other resources with information on 1LBF
  • Community annotation for 1LBF at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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