1LDJ	Ligase	date	Apr 08, 2002
title	Structure Of The Cul1-Rbx1-Skp1-F Boxskp2 Scf Ubiquitin Ligase Complex
authors	N.Zheng, B.A.Schulman, L.Song, J.J.Miller, P.D.Jeffrey, P.Wang, C.Chu, D.M.Koepp, S.J.Elledge, M.Pagano, R.C.Conaway, J.W.Conaway, J.W.Harper, N.P.Pavletich
compound		source
Molecule: Cullin Homolog 1 Chain: A Fragment: Residues 17-776 Synonym: Cul-1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus
Molecule: Ring-Box Protein 1 Chain: B Fragment: Residues 19-108 Synonym: Rbx1 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Spodoptera Frugiperda Expression_system_common: Fall Armyworm Expression_system_taxid: 7108 Expression_system_cell_line: Sf9 Expression_system_vector_type: Baculovirus
symmetry	Space Group: P 1 21 1	R_factor 0.247 R_Free 0.288
crystal cell	length a length b length c angle alpha angle beta angle gamma 113.974 49.968 135.883 90.00 107.83 90.00
method	X-Ray Diffraction	resolution	3.00 Å
ligand	ZN	enzyme
Gene Ontology	Chain Function Process Component A B
Primary reference	Structure of the Cul1-Rbx1-Skp1-F boxSkp2 SCF ubiquitin ligase complex., Zheng N, Schulman BA, Song L, Miller JJ, Jeffrey PD, Wang P, Chu C, Koepp DM, Elledge SJ, Pagano M, Conaway RC, Conaway JW, Harper JW, Pavletich NP, Nature 2002 Apr 18;416(6882):703-9. PMID:11961546

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (133 Kb) [Save to disk] Biological Unit Coordinates (1ldj.pdb1.gz) 125 Kb LPC: Ligand-Protein Contacts for 1LDJ CSU: Contacts of Structural Units for 1LDJ Likely Quarternary Molecular Structure file(s) for 1LDJ Retrieve 1LDJ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1LDJ from S2C, [Save to disk]

View 1LDJ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1LDJ

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1LDJ, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1ldja2, region A:17-410 [Jmol] [rasmolscript] [script source]     - Domain d1ldja3, region A:411-686 [Jmol] [rasmolscript] [script source]     - Domain d1ldja1, region A:687-776 [Jmol] [rasmolscript] [script source]     - Domain d1ldjb_, region B [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1ldj_A] [1ldj] [1ldj_B] SWISS-PROT database: [Q13616] [P62877] Domain organization of [CUL1_HUMAN] [RBX1_HUMAN] by SWISSPFAM Domains found in 1LDJ: [CULLIN] [Cullin_Nedd8] [RING ] by SMART

Other resources with information on 1LDJ

Community annotation for 1LDJ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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