1LDR Binding Protein date Aug 17, 1995
title Second Repeat Of The Ldl Receptor Ligand-Binding Domain
authors N.L.Daly, J.T.Djordjevic, P.A.Kroon, R.Smith
compound source
Molecule: Low-Density Lipoprotein Receptor
Chain: A
Fragment: Ligand-Binding Domain, Second Repeat
Synonym: Lb2
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Human
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_plasmid: Pgex-2t
Expression_system_gene: Human
methodSolution NMR
related structures by homologous chain: 1F5Y
Primary referenceThree-dimensional structure of the second cysteine-rich repeat from the human low-density lipoprotein receptor., Daly NL, Djordjevic JT, Kroon PA, Smith R, Biochemistry 1995 Nov 7;34(44):14474-81. PMID:7578052
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (99 Kb) [Save to disk]
  • Biological Unit Coordinates (1ldr.pdb1.gz) 10 Kb
  • CSU: Contacts of Structural Units for 1LDR
  • Original NMR restraints for 1LDR from PDB
  • Retrieve 1LDR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1LDR from S2C, [Save to disk]
    • View 1LDR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1LDR
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1LDR, from MSDmotif at EBI
  • Genome occurence of 1LDR's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ldr__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ldr] [1ldr_A]
  • SWISS-PROT database: [P01130]
  • Domain organization of [LDLR_HUMAN] by SWISSPFAM
  • Domain found in 1LDR: [LDLa ] by SMART
    • Other resources with information on 1LDR
  • Community annotation for 1LDR at PDBWiki (http://pdbwiki.org)
  • NMR Ensemble (OLDERADO: core, domain and representative structure database)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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