1LFW	Hydrolase	date	Apr 12, 2002
title	Crystal Structure Of Pepv
authors	D.Jozic, G.Bourenkow, H.Bartunik, H.Scholze, V.Dive, B.Henrich, R. W.Bode, K.Maskos
compound		source
Molecule: Pepv Chain: A Synonym: Xaa-His Dipeptidase Ec: 3.4.13.3 Engineered: Yes		Organism_scientific: Lactobacillus Delbrueckii Organism_taxid: 29397 Strain: Lactis Expression_system: Escherichia Coli Expression_system_taxid: 562 Expression_system_strain: Jm83 Expression_system_vector_type: Plasmid Expression_system_plasmid: Pkv104
symmetry	Space Group: P 21 21 21	R_factor 0.174 R_Free NULL
crystal cell	length a length b length c angle alpha angle beta angle gamma 67.151 77.025 89.955 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	1.80 Å
ligand	AEP, ZN	enzyme	Hydrolase E.C.3.4.13.3 BRENDA
Gene Ontology	Chain Function Process Component A
Primary reference	Crystal structure of the dinuclear zinc aminopeptidase PepV from Lactobacillus delbrueckii unravels its preference for dipeptides., Jozic D, Bourenkow G, Bartunik H, Scholze H, Dive V, Henrich B, Huber R, Bode W, Maskos K, Structure (Camb) 2002 Aug;10(8):1097-106. PMID:12176387

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (87 Kb) [Save to disk] Biological Unit Coordinates (1lfw.pdb1.gz) 83 Kb LPC: Ligand-Protein Contacts for 1LFW CSU: Contacts of Structural Units for 1LFW Likely Quarternary Molecular Structure file(s) for 1LFW Retrieve 1LFW in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1LFW from S2C, [Save to disk]

View 1LFW in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1LFW

Ramachandran plot from PDBSum

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1LFW, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1lfwa1, region A:1-186,A:383-468 [Jmol] [rasmolscript] [script source]     - Domain d1lfwa2, region A:187-382 [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1lfw] [1lfw_A] SWISS-PROT database: [P45494] Domain organization of [PEPV_LACDL] by SWISSPFAM

Other resources with information on 1LFW

Community annotation for 1LFW at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---