1LJI Hydrolase date Apr 21, 2002
title Crystal Structure Of Monoclinic Lysozyme Grown In Presence 1 Sorbitol
authors N.T.Saraswathi, R.Sankaranarayanan, M.Vijayan
compound source
Molecule: Lysozyme C
Chain: A, B
Synonym: 1,4-Beta-N-Acetylmuramidase C; Allergen Gal D 4; G
Ec: 3.2.1.17
Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
symmetry Space Group: P 1 21 1
R_factor 0.182 R_Free 0.232
crystal
cell
length a length b length c angle alpha angle beta angle gamma
27.783 62.707 60.285 90.00 90.73 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand NO3 enzyme Hydrolase E.C.3.2.1.17 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceEffect of stabilizing additives on the structure and hydration of proteins: a study involving monoclinic lysozyme., Saraswathi NT, Sankaranarayanan R, Vijayan M, Acta Crystallogr D Biol Crystallogr 2002 Jul;58(Pt 7):1162-7. PMID:12077436
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (50 Kb) [Save to disk]
  • Biological Unit Coordinates (1lji.pdb1.gz) 24 Kb
  • Biological Unit Coordinates (1lji.pdb2.gz) 24 Kb
  • LPC: Ligand-Protein Contacts for 1LJI
  • CSU: Contacts of Structural Units for 1LJI
  • Likely Quarternary Molecular Structure file(s) for 1LJI
  • Structure Factors (200 Kb)
  • Retrieve 1LJI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1LJI from S2C, [Save to disk]
  • Re-refined 1lji structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1LJI in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1LJI
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1LJI, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ljia_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1ljib_, region B [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1lji_B] [1lji_A] [1lji]
  • SWISS-PROT database: [P00698]
  • Domain organization of [LYSC_CHICK] by SWISSPFAM
  • Domain found in 1LJI: [LYZ1 ] by SMART
  • Other resources with information on 1LJI
  • Community annotation for 1LJI at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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