1LJY Signaling Protein date Apr 23, 2002
title Crystal Structure Of A Novel Regulatory 40 Kda Mammary Gland (Mgp-40) Secreted During Involution
authors A.K.Mohanty, G.Singh, M.Paramasivam, K.Saravanan, T.Jabeen, S.Sha S.Yadav, P.Kaur, P.Kumar, A.Srinivasan, T.P.Singh
compound source
Molecule: Mgp-40
Chain: A
Organism_scientific: Capra Hircus
Organism_common: Goat
Organism_taxid: 9925
Other_details: Mammary Gland Secretory Protein.
symmetry Space Group: P 21 21 21
R_factor 0.181 R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
62.950 65.890 107.030 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand NAG, NDG enzyme
related structures by homologous chain: 1XHG, 1ZBK
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structure of a novel regulatory 40-kDa mammary gland protein (MGP-40) secreted during involution., Mohanty AK, Singh G, Paramasivam M, Saravanan K, Jabeen T, Sharma S, Yadav S, Kaur P, Kumar P, Srinivasan A, Singh TP, J Biol Chem 2003 Apr 18;278(16):14451-60. Epub 2003 Jan 14. PMID:12529329
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (64 Kb) [Save to disk]
  • Biological Unit Coordinates (1ljy.pdb1.gz) 59 Kb
  • LPC: Ligand-Protein Contacts for 1LJY
  • CSU: Contacts of Structural Units for 1LJY
  • Likely Quarternary Molecular Structure file(s) for 1LJY
  • Retrieve 1LJY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1LJY from S2C, [Save to disk]
  • View 1LJY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1LJY
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1LJY, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ljya1, region A:1-239,A:308-362 [Jmol] [rasmolscript] [script source]
        - Domain d1ljya2, region A:240-307 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ljy_A] [1ljy]
  • SWISS-PROT database: [Q8SPQ0]
  • Domain organization of [CH3L1_CAPHI] by SWISSPFAM
  • Domain found in 1LJY: [Glyco_18 ] by SMART
  • Other resources with information on 1LJY
  • Community annotation for 1LJY at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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