1LKS Hydrolase date Oct 09, 1997
title Hen Egg White Lysozyme Nitrate
authors L.K.Steinrauf
compound source
Molecule: Lysozyme
Chain: A
Synonym: Muramidase
Ec: 3.2.1.17
 Organism_scientific: Gallus Gallus
Organism_common: Chicken
Organism_taxid: 9031
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
31.970 65.080 27.250 94.57 111.56 82.98
method X-Ray Diffractionresolution 1.10 Å
ligand NO3 enzyme Hydrolase E.C.3.2.1.17 BRENDA
related structures by homologous chain: 1JSE, 4LZT
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructures of monoclinic lysozyme iodide at 1.6 A and of triclinic lysozyme nitrate at 1.1 A., Steinrauf LK, Acta Crystallogr D Biol Crystallogr 1998 Sep 1;54 ( Pt 5):767-80. PMID:9757091
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (1lks.pdb1.gz) 51 Kb
  • LPC: Ligand-Protein Contacts for 1LKS
  • CSU: Contacts of Structural Units for 1LKS
  • Likely Quarternary Molecular Structure file(s) for 1LKS
  • Structure Factors (108 Kb)
  • Retrieve 1LKS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1LKS from S2C, [Save to disk]
    • View 1LKS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1LKS
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Conformational Epitope Prediction for 1LKS from the CEP Server.
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1LKS, from MSDmotif at EBI
  • Genome occurence of 1LKS's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1lks__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1lks_A] [1lks]
  • SWISS-PROT database: [P00698]
  • Domain organization of [LYSC_CHICK] by SWISSPFAM
  • Domain found in 1LKS: [LYZ1 ] by SMART
    • Other resources with information on 1LKS
  • Community annotation for 1LKS at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Domain movements in 1LKS from the Database of Macromolecular Movements.
  • Images from IMB Jena Image Library of Biological Macromolecules.

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