1LLN Hydrolase date Apr 29, 2002
title 1.6a Crystal Structure Of Pokeweed Antiviral Protein-III (Pap-III) With Methylated Lysines
authors I.V.Kurinov, F.M.Uckun
compound source
Molecule: Antiviral Protein 3
Chain: A
Synonym: Pap-II, Ribosome-Inactivating Protein, Rrna N- Glycosidase;
Ec: 3.2.2.22
Organism_scientific: Phytolacca Americana
Organism_common: American Pokeweed
Organism_taxid: 3527
Other_details: Late Summer Leaves
symmetry Space Group: P 31 2 1
R_factor 0.201 R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
80.470 80.470 76.210 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.60 Å
ligand MLY enzyme Hydrolase E.C.3.2.2.22 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • toxin activity


  • Primary referenceHigh resolution X-ray structure of potent anti-HIV pokeweed antiviral protein-III., Kurinov IV, Uckun FM, Biochem Pharmacol 2003 May 15;65(10):1709-17. PMID:12754107
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (53 Kb) [Save to disk]
  • Biological Unit Coordinates (1lln.pdb1.gz) 48 Kb
  • LPC: Ligand-Protein Contacts for 1LLN
  • CSU: Contacts of Structural Units for 1LLN
  • Likely Quarternary Molecular Structure file(s) for 1LLN
  • Retrieve 1LLN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1LLN from S2C, [Save to disk]
  • View 1LLN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1LLN
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1LLN, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1llna_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1lln_A] [1lln]
  • SWISS-PROT database: [Q40772]
  • Domain organization of [RIP2_PHYAM] by SWISSPFAM
  • Other resources with information on 1LLN
  • Community annotation for 1LLN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science