1LLQ Oxidoreductase date Apr 29, 2002
title Crystal Structure Of Malic Enzyme From Ascaris Suum Complexe Nicotinamide Adenine Dinucleotide
authors D.E.Coleman, G.S.Jagannatha, E.J.Goldsmith, P.F.Cook, B.G.Harris
compound source
Molecule: Nad-Dependent Malic Enzyme
Chain: A, B
Synonym: Nad-Me
Ec: 1.1.1.38
Organism_scientific: Ascaris Suum
Organism_common: Pig Roundworm
Organism_taxid: 6253
symmetry Space Group: P 31 2 1
R_factor 0.247 R_Free 0.280
crystal
cell
length a length b length c angle alpha angle beta angle gamma
130.620 130.620 149.230 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand NAD enzyme Oxidoreductase E.C.1.1.1.38 BRENDA
related structures by homologous chain: 1O0S
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceCrystal structure of the malic enzyme from Ascaris suum complexed with nicotinamide adenine dinucleotide at 2.3 A resolution., Coleman DE, Rao GS, Goldsmith EJ, Cook PF, Harris BG, Biochemistry 2002 Jun 4;41(22):6928-38. PMID:12033925
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (196 Kb) [Save to disk]
  • Biological Unit Coordinates (1llq.pdb1.gz) 377 Kb
  • LPC: Ligand-Protein Contacts for 1LLQ
  • CSU: Contacts of Structural Units for 1LLQ
  • Likely Quarternary Molecular Structure file(s) for 1LLQ
  • Structure Factors (495 Kb)
  • Retrieve 1LLQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1LLQ from S2C, [Save to disk]
  • Re-refined 1llq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1LLQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1LLQ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1LLQ, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1llqa2, region A:2-295 [Jmol] [rasmolscript] [script source]
        - Domain d1llqa1, region A:296-600 [Jmol] [rasmolscript] [script source]
        - Domain d1llqb2, region B:2-295 [Jmol] [rasmolscript] [script source]
        - Domain d1llqb1, region B:296-593 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1llq_B] [1llq] [1llq_A]
  • SWISS-PROT database: [P27443]
  • Domain organization of [MAOM_ASCSU] by SWISSPFAM
  • Domains found in 1LLQ: [Malic_M] [malic ] by SMART
  • Other resources with information on 1LLQ
  • Community annotation for 1LLQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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