1LMN Hydrolase (O-Glycosyl) date Oct 19, 1994
title The Refined Crystal Structure Of Lysozyme From The Rainbow T (Oncorhynchus Mykiss)
authors S.Karlsen, E.Hough
compound source
Molecule: Rainbow Trout Lysozyme
Chain: A
Ec: 3.2.1.17
Engineered: Yes
 Organism_scientific: Oncorhynchus Mykiss
Organism_common: Rainbow Trout
Organism_taxid: 8022
symmetry Space Group: P 31 2 1
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
76.680 76.680 54.460 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.80 Å
ligand
enzyme Hydrolase E.C.3.2.1.17 BRENDA
related structures by homologous chain: 1GE4, 1JKD
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceRefined crystal structure of lysozyme from the rainbow trout (Oncorhynchus mykiss)., Karlsen S, Eliassen BE, Hansen LK, Larsen RL, Riise BW, Smalas AO, Hough E, Grinde B, Acta Crystallogr D Biol Crystallogr. 1995 May 1;51(Pt 3):354-67. PMID:15299303
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (27 Kb) [Save to disk]
  • Biological Unit Coordinates (1lmn.pdb1.gz) 23 Kb
  • CSU: Contacts of Structural Units for 1LMN
  • Likely Quarternary Molecular Structure file(s) for 1LMN
  • Structure Factors (108 Kb)
  • Retrieve 1LMN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1LMN from S2C, [Save to disk]
  • Re-refined 1lmn structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1LMN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1LMN
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1LMN, from MSDmotif at EBI
  • Genome occurence of 1LMN's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1lmn__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1lmn_A] [1lmn]
  • SWISS-PROT database: [P11941]
  • Domain organization of [LYSC2_ONCMY] by SWISSPFAM
  • Domain found in 1LMN: [LYZ1 ] by SMART
    • Other resources with information on 1LMN
  • Community annotation for 1LMN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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