1LMQ Hydrolase (O-Glycosyl) date Oct 25, 1994
title The Crystal Structures Of Three Complexes Between Chitooligosaccharides And Lysozyme From The Rainbow Trout
authors S.Karlsen, E.Hough
compound source
Molecule: Lysozyme
Chain: A
Synonym: Mucopeptide N-Acetylmuramylhydrolase
Ec: 3.2.1.17
Organism_scientific: Oncorhynchus Mykiss
Organism_common: Rainbow Trout
Organism_taxid: 8022
Organ: Kidney
symmetry Space Group: P 31 2 1
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
76.580 76.580 54.190 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.60 Å
ligand NAG, NDG enzyme Hydrolase E.C.3.2.1.17 BRENDA
related structures by homologous chain: 1LZA, 1LZS, 1YIL
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal structures of three complexes between chito-oligosaccharides and lysozyme from the rainbow trout. How distorted is the NAG sugar in site D?, Karlsen S, Hough E, Acta Crystallogr D Biol Crystallogr. 1995 Nov 1;51(Pt 6):962-78. PMID:15299765
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (29 Kb) [Save to disk]
  • Biological Unit Coordinates (1lmq.pdb1.gz) 25 Kb
  • LPC: Ligand-Protein Contacts for 1LMQ
  • CSU: Contacts of Structural Units for 1LMQ
  • Likely Quarternary Molecular Structure file(s) for 1LMQ
  • Structure Factors (185 Kb)
  • Retrieve 1LMQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1LMQ from S2C, [Save to disk]
  • Re-refined 1lmq structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1LMQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1LMQ
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1LMQ, from MSDmotif at EBI
  • Genome occurence of 1LMQ's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1lmq__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1lmq_A] [1lmq]
  • SWISS-PROT database: [P11941]
  • Domain organization of [LYSC2_ONCMY] by SWISSPFAM
  • Domain found in 1LMQ: [LYZ1 ] by SMART
  • Other resources with information on 1LMQ
  • Community annotation for 1LMQ at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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