1LQJ	Hydrolase	date	May 10, 2002
title	Escherichia Coli Uracil-Dna Glycosylase
authors	K.Saikrishnan, M.B.Sagar, R.Ravishankar, S.Roy, K.Purnapatre, U.V M.Vijayan
compound		source
Molecule: Uracil-Dna Glycosylase Chain: A, B, C, D Synonym: Udg; Uracil-Dna-Glycosylase Ec: 3.2.2.- Engineered: Yes		Organism_scientific: Escherichia Coli Organism_taxid: 562 Expression_system: Escherichia Coli Expression_system_taxid: 562
symmetry	Space Group: P 32	R_factor 0.241 R_Free 0.326
crystal cell	length a length b length c angle alpha angle beta angle gamma 125.210 125.210 90.047 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	3.35 Å
ligand		enzyme	Hydrolase E.C.3.2.2 BRENDA
Gene Ontology	Chain Function Process Component A, D, C, B
Primary reference	Domain closure and action of uracil DNA glycosylase (UDG): structures of new crystal forms containing the Escherichia coli enzyme and a comparative study of the known structures involving UDG., Saikrishnan K, Bidya Sagar M, Ravishankar R, Roy S, Purnapatre K, Handa P, Varshney U, Vijayan M, Acta Crystallogr D Biol Crystallogr 2002 Aug;58(Pt 8):1269-76. PMID:12136137

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (139 Kb) [Save to disk] Biological Unit Coordinates (1lqj.pdb1.gz) 36 Kb Biological Unit Coordinates (1lqj.pdb2.gz) 35 Kb Biological Unit Coordinates (1lqj.pdb3.gz) 36 Kb Biological Unit Coordinates (1lqj.pdb4.gz) 36 Kb CSU: Contacts of Structural Units for 1LQJ Likely Quarternary Molecular Structure file(s) for 1LQJ Structure Factors (237 Kb) Retrieve 1LQJ in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1LQJ from S2C, [Save to disk] Re-refined 1lqj structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1LQJ in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1LQJ

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1LQJ, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1lqja_, region A [Jmol] [rasmolscript] [script source]     - Domain d1lqjb_, region B [Jmol] [rasmolscript] [script source]     - Domain d1lqjc_, region C [Jmol] [rasmolscript] [script source]     - Domain d1lqjd_, region D [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1lqj_C] [1lqj_A] [1lqj_B] [1lqj] [1lqj_D] SWISS-PROT database: [P12295] Domain organization of [UNG_ECOLI] by SWISSPFAM Domains found in 1LQJ: [UDG] [UreE_C ] by SMART

Other resources with information on 1LQJ

Community annotation for 1LQJ at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

Movements, Movies and Images

Images from IMB Jena Image Library of Biological Macromolecules.

You may enter another PDB ID code

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]

---

OCA© by Jaime Prilusky, 1996-2014,2022 Bioinformatics Unit Weizmann Institute of Science

---