1LS9 Electron Transport date May 17, 2002
title Structure Of The Cytochrome C6 From The Green Alga Cladophora Glomerata
authors W.Carpentier
compound source
Molecule: Cytochrome C6
Chain: A
Organism_scientific: Cladophora Glomerata
Organism_taxid: 162068
symmetry Space Group: P 41 21 2
R_factor 0.143 R_Free 0.190
crystal
cell
length a length b length c angle alpha angle beta angle gamma
46.063 46.063 100.526 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.30 Å
ligand HEM enzyme
related structures by homologous chain: 1CTJ, 1CYJ
Gene
Ontology
ChainFunctionProcessComponent
A
  • electron transfer activity


  • Primary referenceStructural basis for the molecular properties of cytochrome c6., Dikiy A, Carpentier W, Vandenberghe I, Borsari M, Safarov N, Dikaya E, Van Beeumen J, Ciurli S, Biochemistry 2002 Dec 17;41(50):14689-99. PMID:12475218
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (42 Kb) [Save to disk]
  • Biological Unit Coordinates (1ls9.pdb1.gz) 37 Kb
  • LPC: Ligand-Protein Contacts for 1LS9
  • CSU: Contacts of Structural Units for 1LS9
  • Likely Quarternary Molecular Structure file(s) for 1LS9
  • Structure Factors (375 Kb)
  • Retrieve 1LS9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1LS9 from S2C, [Save to disk]
  • Re-refined 1ls9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1LS9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1LS9
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Conformational Epitope Prediction for 1LS9 from the CEP Server.
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1LS9, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1ls9a_, region A [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1ls9] [1ls9_A]
  • SWISS-PROT database: [P83391]
  • Domain organization of [CYC6_CLAGO] by SWISSPFAM
  • Other resources with information on 1LS9
  • Community annotation for 1LS9 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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