1LSH Lipid Binding Protein date May 17, 2002
title Lipid-Protein Interactions In Lipovitellin
authors J.R.Thompson, L.J.Banaszak
compound source
Molecule: Lipovitellin (Lv-1n, Lv-1c)
Chain: A
Fragment: Lv1n, Lv1c
Organism_scientific: Ichthyomyzon Unicuspis
Organism_taxid: 30308
Other_details: Egg Yolk

Molecule: Lipovitellin (Lv-2)
Chain: B
Fragment: Lv2

Organism_scientific: Ichthyomyzon Unicuspis
Organism_taxid: 30308
Other_details: Egg Yolk
symmetry Space Group: C 1 2 1
R_factor 0.193 R_Free 0.255
crystal
cell
length a length b length c angle alpha angle beta angle gamma
190.170 84.520 89.530 90.00 100.39 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand PCA, PLD, UPL enzyme
note 1LSH is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceLipid-protein interactions in lipovitellin., Thompson JR, Banaszak LJ, Biochemistry 2002 Jul 30;41(30):9398-409. PMID:12135361
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (236 Kb) [Save to disk]
  • Biological Unit Coordinates (1lsh.pdb1.gz) 218 Kb
  • LPC: Ligand-Protein Contacts for 1LSH
  • CSU: Contacts of Structural Units for 1LSH
  • Likely Quarternary Molecular Structure file(s) for 1LSH
  • Structure Factors (920 Kb)
  • Retrieve 1LSH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1LSH from S2C, [Save to disk]
  • Re-refined 1lsh structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1LSH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1LSH
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1LSH, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1lsha2, region A:17-284 [Jmol] [rasmolscript] [script source]
        - Domain d1lsha1, region A:285-620 [Jmol] [rasmolscript] [script source]
        - Domain d1lsha3, region A:621-1073 [Jmol] [rasmolscript] [script source]
        - Domain d1lshb_, region B [Jmol] [rasmolscript] [script source]
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1lsh_A] [1lsh] [1lsh_B]
  • SWISS-PROT database: [Q91062]
  • Domain organization of [VIT_ICHUN] by SWISSPFAM
  • Domains found in 1LSH: [DUF1943] [DUF1944] [LPD_N ] by SMART
  • Other resources with information on 1LSH
  • Community annotation for 1LSH at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014,2022
    Bioinformatics Unit
    Weizmann Institute of Science