1LZ5 Hydrolase(O-Glycosyl) date Feb 03, 1993
title Structural And Functional Analyses Of The Arg-Gly-Asp Sequen Introduced Into Human Lysozyme
authors M.Matsushima, K.Inaka, T.Yamada, K.Sekiguchi, M.Kikuchi
compound source
Molecule: Human Lysozyme
Chain: A
Ec: 3.2.1.17
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor
R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
56.610 60.850 33.860 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand CL enzyme Hydrolase E.C.3.2.1.17 BRENDA
related structures by homologous chain: 1HNL, 1OUA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural and functional analyses of the Arg-Gly-Asp sequence introduced into human lysozyme., Yamada T, Matsushima M, Inaka K, Ohkubo T, Uyeda A, Maeda T, Titani K, Sekiguchi K, Kikuchi M, J Biol Chem 1993 May 15;268(14):10588-92. PMID:8486712
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (27 Kb) [Save to disk]
  • Biological Unit Coordinates (1lz5.pdb1.gz) 24 Kb
  • LPC: Ligand-Protein Contacts for 1LZ5
  • CSU: Contacts of Structural Units for 1LZ5
  • Likely Quarternary Molecular Structure file(s) for 1LZ5
  • Structure Factors (71 Kb)
  • Retrieve 1LZ5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1LZ5 from S2C, [Save to disk]
  • Re-refined 1lz5 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 1LZ5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 1LZ5
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1LZ5, from MSDmotif at EBI
  • Genome occurence of 1LZ5's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1lz5__, region [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1lz5_A] [1lz5]
  • SWISS-PROT database: [P61626]
  • Domain organization of [LYSC_HUMAN] by SWISSPFAM
  • Domain found in 1LZ5: [LYZ1 ] by SMART
    • Other resources with information on 1LZ5
  • Community annotation for 1LZ5 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
    • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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