1M06 Structural Studies of Bacteriophage alpha3 Assembly, X-Ray Crystallography date
authors Bernal, R.A., Hafenstein, S., Olson, N.H., Bowman, V., Chipman, P.R., Baker, T.S., Fane, B.A., Rossmann, M.G.
compound source
symmetry
R_factor
R_Free 0.234
crystal
cell
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution 3.50
ligand 3DR enzyme
note 1M06 is a representative structure
Gene
Ontology
ChainFunctionProcessComponent
F


G


J


Primary referenceStructural studies of bacteriophage alpha3 assembly., Bernal RA, Hafenstein S, Olson NH, Bowman VD, Chipman PR, Baker TS, Fane BA, Rossmann MG, J Mol Biol 2003 Jan 3;325(1):11-24. PMID:12473449
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk]
  • Biological Unit Coordinates (1m06.pdb1.gz) 5456 Kb
  • LPC: Ligand-Protein Contacts for 1M06
  • CSU: Contacts of Structural Units for 1M06
  • Likely Quarternary Molecular Structure file(s) for 1M06
  • Structure Factors (4877 Kb)
  • Retrieve 1M06 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1M06 from S2C, [Save to disk]
  • View 1M06 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1M06
  • VIPERdb: visual, structural and computational analysis of 1M06
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1M06, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1m06f_, region F [Jmol] [rasmolscript] [script source]
        - Domain d1m06g_, region G [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1m06] [1m06_G] [1m06_F] [1m06_J] [1m06_X]
  • SWISS-PROT database: [P08767] [P31281] [P69548]
  • Domain organization of [VGF_BPAL3] [VGG_BPAL3] [VGJ_BPAL3] by SWISSPFAM
  • Other resources with information on 1M06
  • Community annotation for 1M06 at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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