1M2T Ribosome Inhibitor, Hydrolase date Jun 25, 2002
title Mistletoe Lectin I From Viscum Album In Complex With Adenine Monophosphate. Crystal Structure At 1.9 A Resolution
authors R.Krauspenhaar, W.Rypniewski, N.Kalkura, K.Moore, L.Delucas, S.St A.Mikhailov, W.Voelter, C.Betzel
compound source
Molecule: Mistletoe Lectin I A Chain
Chain: A
Synonym: Beta-Galactoside Specific Lectin I A Chain; Mla; M Rrna N-Glycosidase;
Ec: 3.2.2.22
Organism_scientific: Viscum Album
Organism_common: European Mistletoe
Organism_taxid: 3972
Organ: Leaf

Molecule: Mistletoe Lectin I B Chain
Chain: B
Synonym: Lectin Chain A Isoform 1

Organism_scientific: Viscum Album
Organism_common: European Mistletoe
Organism_taxid: 3972
Organ: Leaf
symmetry Space Group: P 65 2 2
R_factor 0.210 R_Free 0.240
crystal
cell
length a length b length c angle alpha angle beta angle gamma
107.120 107.120 309.820 90.00 90.00 120.00
method X-Ray Diffractionresolution 1.89 Å
ligand ADE, FUC, GOL, NAG enzyme Hydrolase E.C.3.2.2.22 BRENDA
related structures by homologous chain: 1SZ6
Gene
Ontology
ChainFunctionProcessComponent
A


B


Primary referenceCrystallisation under microgravity of mistletoe lectin I from Viscum album with adenine monophosphate and the crystal structure at 1.9 A resolution., Krauspenhaar R, Rypniewski W, Kalkura N, Moore K, DeLucas L, Stoeva S, Mikhailov A, Voelter W, Betzel Ch, Acta Crystallogr D Biol Crystallogr 2002 Oct;58(Pt 10 Pt 1):1704-7. PMID:12351890
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (98 Kb) [Save to disk]
  • Biological Unit Coordinates (1m2t.pdb1.gz) 92 Kb
  • LPC: Ligand-Protein Contacts for 1M2T
  • CSU: Contacts of Structural Units for 1M2T
  • Likely Quarternary Molecular Structure file(s) for 1M2T
  • Structure Factors (591 Kb)
  • Retrieve 1M2T in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 1M2T from S2C, [Save to disk]
  • Re-refined 1m2t structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 1M2T in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 1M2T
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • 3D motif for 1M2T, from MSDmotif at EBI
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d1m2ta_, region A [Jmol] [rasmolscript] [script source]
        - Domain d1m2tb1, region B:249-384 [Jmol] [rasmolscript] [script source]
        - Domain d1m2tb2, region B:385-510 [Jmol] [rasmolscript] [script source]
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [1m2t] [1m2t_B] [1m2t_A]
  • SWISS-PROT database: [P81446]
  • Domain organization of [ML1_VISAL] by SWISSPFAM
  • Domain found in 1M2T: [RICIN ] by SMART
  • Other resources with information on 1M2T
  • Community annotation for 1M2T at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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