1M2Z	Hormone Hormone Activator	date	Jun 26, 2002
title	Crystal Structure Of A Dimer Complex Of The Human Glucocorti Receptor Ligand-Binding Domain Bound To Dexamethasone And A Coactivator Motif
authors	R.B.Bledsoe, V.G.Montana, T.B.Stanley, C.J.Delves, C.J.Apolito, D T.G.Consler, D.J.Parks, E.L.Stewart, T.M.Willson, M.H.Lambert, J K.H.Pearce, H.E.Xu
compound		source
Molecule: Glucocorticoid Receptor Chain: A, D Fragment: Ligand Binding Domain, Residues 521-777 Synonym: Gr Engineered: Yes Mutation: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Bl21(De3) Expression_system_taxid: 469008 Expression_system_strain: Bl21 (De3) Expression_system_vector_type: Pet System Expression_system_plasmid: Pet24
Molecule: Nuclear Receptor Coactivator 2 Chain: B, E Fragment: Tif2 Coactivator Motif, Residues 734-754 Synonym: Transcriptional Intermediary Factor 2, Tif2 Engineered: Yes		Synthetic: Yes Other_details: The Peptide Was Chemically Synthesized. The The Peptide Is Naturally Found In Homo Sapiens (Human).
symmetry	Space Group: P 61	R_factor 0.237 R_Free 0.267
crystal cell	length a length b length c angle alpha angle beta angle gamma 125.843 125.843 85.976 90.00 90.00 120.00
method	X-Ray Diffraction	resolution	2.50 Å
ligand	BOG, DEX BindingDB	enzyme
related structures	by homologous chain: 1KNU
Primary reference	Crystal structure of the glucocorticoid receptor ligand binding domain reveals a novel mode of receptor dimerization and coactivator recognition., Bledsoe RK, Montana VG, Stanley TB, Delves CJ, Apolito CJ, McKee DD, Consler TG, Parks DJ, Stewart EL, Willson TM, Lambert MH, Moore JT, Pearce KH, Xu HE, Cell 2002 Jul 12;110(1):93-105. PMID:12151000

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (102 Kb) [Save to disk] Biological Unit Coordinates (1m2z.pdb1.gz) 96 Kb LPC: Ligand-Protein Contacts for 1M2Z CSU: Contacts of Structural Units for 1M2Z Likely Quarternary Molecular Structure file(s) for 1M2Z Structure Factors (252 Kb) Retrieve 1M2Z in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 1M2Z from S2C, [Save to disk] Re-refined 1m2z structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 1M2Z in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 1M2Z

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute 3D motif for 1M2Z, from MSDmotif at EBI Classification of representative domains in scop (Structural Classification of Proteins)     - Domain d1m2za_, region A [Jmol] [rasmolscript] [script source]     - Domain d1m2zd_, region D [Jmol] [rasmolscript] [script source] Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH Summaries and structural analyses of PDB data files from PDBSum Identification of Protein Pockets & Cavities at CASTp

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [1m2z_E] [1m2z] [1m2z_D] [1m2z_B] [1m2z_A] SWISS-PROT database: [P04150] [Q15596] Domain organization of [GCR_HUMAN] [NCOA2_HUMAN] by SWISSPFAM Domain found in 1M2Z: [HOLI ] by SMART

Other resources with information on 1M2Z

Community annotation for 1M2Z at PDBWiki (http://pdbwiki.org) MMDB (Entrez's Structure Database)

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